Manhattan Plot from Scientific Research

Domestication sweeps in wild/landrace and cultivar populations. The value of π (wild)/π (cultivar) is plotted against position on chromosome A02. SNPs close to GRDP1 are colored green. Boxplot presenting differences of expression in each accession according to index SNP genotypes in the wild/landrace and cultivar populations. Boxes show the medians and interquartile ranges (IQRs). The end of the top line is the maximum or the third quartile (Q) + 1.5 IQR. The end of the bottom line denotes either the minimum or the first Q - 1.5 IQR. Dots are either more than the third Q + 1.5 IQR or less than the first Q - 1.5 IQR. Asterisks indicate significant differences by two-tailed Mann-Whitney test (*p ≤ 0.001).

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