Bar Plot from Scientific Research

Quantitative benchmarks of the ability of TM-Vec to predict CATH labels. We compared with ProtTrans and five structure-based methods: cliques, GRAFENE, ORCA, CNN (influenced by DeepFRI) and GCN (influenced by the Kipf and Welling GAE). Adjusted mutual information was computed by comparing spectral clustering assignments with structural label assignments for each CATH classification tier. Triplet-scoring AUPR is a metric that determines how often cosine embedding distances from within structural categories are smaller than cosine embedding distances across structural categories.

DOI