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Results for estimated effective population size. ROC curves of both haplotype and SNP based tests are shown for a scenario where (Ne) is estimated. Here, the ROC curve is obtained using the same parameters as in the right panel of Fig. 1 , but with (Ne) estimated. In the top figure, (Ne) is estimated from SNPs taken from an independent neutrally evolving window. In the bottom figure, (Ne) is estimated using the testing window regardless of the presence of selection
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