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An example to show the genome matches of contig fragments recovered from SR assembly to the long contig (i.e., CB17_contig_337_pilon) recovered from SLR assembly. More examples of such comparisons are provided in Tables S3 and S4 for the vOTUs from the samples CB17 and CB18, respectively. SR assembly: only short reads from Illumina sequencing were used for assembly; SLR assembly: half depth of Illumina short reads and half depth of Nanopore long reads were used for hybrid and Pilon software-based assemblies (see Table S2 and “ Methods ”)
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