Bubble Plot from Scientific Research

Learned representation of milk glycans. Using a SweetNet-type model trained on predicting taxonomic species from glycans, we retrieved representations of all unique milk glycans in our dataset via the glycans_to_emb function from glycowork, depicted them via t-distributed stochastic neighbor embedding (t-SNE), and colored them as to their fucosylation and sialylation status. Node size is scaled by the probability of being experimentally observed versus inferred across our set of species.

DOI