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Schematic representation of the two different ChIP-seq datasets (Marzi et al. and Girdhar et al.) used for the re-analysis and their respective peak sets (left), the original count matrices (middle) and the count matrices obtained by quantifying the reads from one data in the peak set from the other data (right). Data obtained from Marzi et al. are indicated in dark red. The different types of analyses and the different models used throughout the re-analysis are shown in the two frames.
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