UMAP from Scientific Research

Top panels: UMAP visualizations based on the latent space from scTour (left), scVI without batch correction (middle), and scVI with batch information incorporated during model training (right). Cells are color-coded by cell types as in c . Bottom panels: metrics quantifying the degree of batch correction (batch mixing entropy and graph connectivity) and biological signal conservation (cell type ASW) for each method. ASW, average silhouette width

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