Line Plot from Scientific Research

Genomic assay signal for an HPV integration site of SiHa (chr13:73,513,424). Top: RNA expression FPM; middle: ATAC-seq FPM; bottom: CTCF ChIP-seq RPM. Pink bars: signal from SiHa; blue bars: signal from 4 other HPV + cell lines without integration at this position. Red dashed line: HPV integration site. Inset at top right of each panel shows signal within the hybrid genomic window including the host genome upstream of the integration site, full-length HPV16 (red shading) beginning at the integration site, a gap representing uncertainty in the end of the integrated HPV genome, and the host genome downstream of the integration site.

DOI