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Imputation accuracy (Aggregate r2, y axis) for 1,000 white British samples genotyped with the Axiom array when using reference panels phased with either SHAPEIT5 (blue) or Beagle v.5.4 (black) WES. The zoomed-in views show the increase of imputation accuracy at rare variants using the UKB dataset phased with SHAPEIT5 compared with Beagle v.5.4 as a reference panel.
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