Heatmap from Scientific Research

Strategy for identifying genomic regions forming many contacts specific to either GAM or Hi-C. We counted how often a genomic region was an anchor point in the set of GAM-specific contacts, Hi-C-specific contacts or strong-and-common contacts. The 10% of genomic windows with the highest absolute difference between the number of GAM-specific and Hi-C-specific contacts were classified as Hi-C-preferred regions or GAM-preferred regions, respectively. Similarly, the top 10% of strong-and-common contacts were used to define common regions that participate to a similar extent in strong contacts seen in both methods.

DOI