Violin Plot from Scientific Research

CGIs were clustered based on their percentage methylation and ATAC-seq signal (RPKM) in the Holstein Friesian data. Clustering was performed using finite Gaussian mixture modelling (GMM) fitted by the expectation-maximisation (EM) algorithm. Each CGI was only assigned to one gene which had the closest TSS. The RNA-seq expression values for the nearest gene to each CGI are shown as well as the distance of each CGI from the nearest TSS. Clusters are ordered by increasing median percentage methylation and are numbered according to this order. This clustering was repeated for the N’Dama and Nelore data (see Additional file 1 : Fig. S5).

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