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Summary of mosaic data integration task and features used. Cells captured using scRNA-seq belonging to the E8.5 mouse gastrulation atlas 1 , WT/WT chimera 1 and T -/- /WT chimera 32 . seqFISH cells are obtained from sagittal sections of three E8.5 embryos 7 . Features used for the scRNA-seq data are the union of the HVGs for each dataset. Features used for the seqFISH data are the gene expression of each cell, as well as the mean gene expression of the most proximal cells in space.

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