User interface for basic sample statistics with table representation of missing data. The parameters used are shown in Additional file 2 : Table S3 (Run A). 1 The parameters used in the analysis stage, which are specified in the configuration file; 2 the numbers of analyzed samples, loaded variants, and variants remaining after filtering and LD pruning, which were calculated at the analysis stage; 3 a download button for the PLINK 1.9.bim file; 4 four tabs in the main menu of the user interface with the Basic statistics tab selected; 5 a radio button with two values: Original and After filtering, corresponding to the datasets displayed on this tab; 6 a radio button labeled Reports whose values correspond to the types of reports displayed and its two values for the Original dataset; 7 a radio button labeled Views for the two types of data presentation such as Table and Chart; 8 a button to download the results of the basic statistics analysis as a ZIP file. The Sample-based missing data report for 143 accessions of rice varieties is represented as an interactive table with sorting and searching features. The symbol prime (') at the upper right of the numbers indicates selected items
