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Computing the probabilities of detecting new SV-alleles in a window. First, the chromosome is divided into non overlapping windows. For each window the number of distinct observed SV-alleles is counted and the diversity parameter is estimated Eq. 2 (see Methods ). Finally, the probability of detecting a clairvoyant SV (clSV) (p_{new} ) for each particular window is computed using Eq. 3 (see Methods ).
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