Transcriptomic analyses performed on 12-day-old seedlings, including 35S:C4 (lines 8 and 22, T3), 35S:C4CCLm1(lines 3 and 8, T3), 35S:C4CCLm2(lines 46 and 105, T3), and WT as reference. Venn diagrams show the number of overlapping genes identified as downregulated (DR) or upregulated (UR) in each specific genotype when compared to the reference WT. In the bottom part, the GO enrichment analysis shows GO categories specifically over-represented in the subset of DR genes in the 35S:C4 genotype: note the presence of “response to auxin” in this list. FDR, false discovery rate; E, energy (for GO category); , overlapping genes.
