Line Plot from Scientific Research

The estimated FDR or the estimated FDP averaged over 100 sets of decoys and entrapments is plotted against the corresponding castor-based estimates. This experiment uses an original target database consisting of the ISB18 and castor peptides at a ratio of 1:636. The combined and paired curves visually overlap due to the small proportion of native ISB18 peptides in the ISB18 + castor database. The lists of discoveries for a and b were generated by searching with Tide, followed by peptide-level FDR control.

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