Box Plot from Scientific Research

Execution time based on the dataset used for a . Complexes were binned by their number of chains; selected bins are shown (for all bins, see Supplementary Fig. 3 ). Box plots depict quartiles, each point is a complex pair (top) or complex (bottom), sample sizes are indicated as N , and whiskers are drawn to the maximum (minimum) point within 1.5 times the interquartile range over (under) the 75th (25th) percentile. Pairwise mode (top): Foldseek-Multimer is 10–100 times faster than US-align due to efficient chain-to-chain alignment and superposition clustering. Database search (bottom): complexes were queried against 3DComplexV7. Foldseek-Multimer is further accelerated by its prefilter, making it 10 3 –10 4 times faster.

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