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Root mean square deviations (rmsd) of Ca atomic displacements after partial occupancy refinement are shown averaged over the time-delays Δ t = 0 ms to 90 ms (blue line) and for the photostationary state (red line). Coordinate error bars are estimated from procedures developed in reference 64: 100 sets of refined coordinates are generated from 100 sets of bootstrap resampled data, and the standard-deviations (error bar estimates) of the mean separations between coordinates from light and dark data are calculated.
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