Microscopy from Scientific Research

Segmentation of nuclei in volume EM. The table compares the average annotation time per object for SAM, using a default model and a model fine-tuned for this data, with ilastik carving. For the fine-tuned model, we start annotation from an initial 3D segmentation provided by the model; otherwise, we annotate each object interactively. The image below shows the result after correction for the fine-tuned model.

DOI