Workflow from Scientific Research

We provide a napari plugin for segmenting multidimensional microscopy data. This tool uses SAM, including our improved models for LM and EM (see b ). It supports automatic and interactive segmentation as well as model retraining on user data. The drawing sketches a complete workflow based on automatic segmentation, correction of the segmentation masks through interactive segmentation and model retraining based on the obtained annotations. Individual parts of this workflow can also be used on their own, for example, only interactive segmentation can be used as indicated by the dashed line.

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