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Schematic illustrating our method for assigning oCGIs and peaks to genes as described in the text and Additional file 1 : Figure S42, using a pairwise comparison of rat and pig as an example. Left : A gene associated with a rat-only oCGI in a rat-only H3K27ac peak, which means the gene is assigned to the rat-only set (A-only set) of genes. Right : A gene associated with a pig-only oCGI in a pig-only H3K27ac peak, which means the gene is assigned to the pig-only set (B-only set) of genes.

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