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Fragment likelihood (p(r_i|a_i)) model, which is the probability that subread r_i is sequenced from subassembly a_i . The i th fragment (a_i,r_i) is dived into independent map (a_{m,i},r_{m,i}) (red) and gap (a_{g,i},r_{g,i}) (blue). p(r_i|a_i) correspondingly comprises p(r_{m,i}|a_{m,i}) and p(r_{g,i}|a_{g,i}) . The two likelihoods are approximated by p_{m} and p_{g} , which are functions of observable variables Theta

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