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Neighbor-joining tree representing the genetic relationships between all CapsellaTPS02 haplotypes identified. The bootstrap consensus tree was inferred from 1,000 replicates. Branches corresponding to partitions reproduced in less than 50% of bootstrap replicates are collapsed. Red branches illustrate haplotypes containing the candidate causal mutation at SNP 9.384.490. Cg haplotypes containing the Cr allele at this position are marked by a red dot if they show signs of recent introgression (Cgig) or by an orange dot if they do not show any signs of recent introgression (CgSNP).

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