Manhattan Plot from Scientific Research

GWAS Manhattan and quantilequantile (QQ) plots for the TNBs. The MLM implemented in the R package GAPIT was used to test for markertrait association. The horizontal line in each Manhattan plot indicates the log 10 P threshold for significant association after the Bonferroni correction. The shaded area in the QQ plots indicates the 95% confidence interval under the null hypothesis of no association between the SNPs and the trait, under the assumption of a uniform [0, 1] distribution for the P values. Mu, mutations.

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