Workflow from Scientific Research

Open access visualization of Workflow, Line Plot, Density Plot, Sequencing, Population Dynamics
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Sequencing was used to assess the population dynamics of genomic DNA libraries, generating counts for each variant using the QUANTS pipeline. DESeq2 was used to convert counts into an LFC of variant abundance over time. LFCs were then median scaled and a single functional score was computed through the aggregation of library A and library B data. Functional scores were categorized on the basis of a significance threshold and assessed for accuracy against variants with known pathogenic or benign classifications.

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