The confidence in cell state transitions as determined by pyVIA is presented for various datasets and experimental conditions. The corresponding color bars signify the methodology employed. Specifically, for the pancreas dataset with Ngn3 High EP dropouts, the displayed confidence indicates the transition from Ngn3 High EP to pre-endocrine cells. In the bone marrow dataset with HSC dropouts, the values represent the transition confidence from HSC to Monocytes. Likewise, the Dentate Gyrus dataset with dropouts of Granule Immature cells indicates the transition confidence from Granule immature to Granule mature cells.