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Schematic of possible results for the RNA-seq data analysis. Correlation plot where the x axis represents the fold change of DEGs in diapause vs. development control (wild type and scramble), and the y axis represents the fold change of DEGs in diapause embryos of transcription factor knockout (KO) vs. scramble. No correlation would indicate that the TF knockout has no effect on the diapause program (upper right). A positive correlation would indicate that the diapause program is enhanced upon TF knockout (middle right). A negative correlation would indicate that the diapause program is decreased by TF knockout and switches to a development-like state (bottom right).
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