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pBI143 (left) and bacterial host (right) genome phylogenies. The pBI143 phylogeny was constructed using the MobA and RepA genes; the bacterial phylogeny was constructed using 38 ribosomal proteins (seeSTAR Methods). Blue alluvial plots are isolates with version 1 pBI143, and red alluvial plots are isolates with version 2 pBI143. No isolates had the rarer version 3. See alsoTables S1andS4.
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