Heatmap of selected functional groups of DEGs in WT, lsh1, lsh1/lsh2, and nf-ya1 at 24 and 72 hpi and in response to combined ectopic expression of LSH1/LSH2 (pLjUBI:LSH1/LSH2) or NF-YA1 (pLjUBI:NF-YA1) compared with empty vector control in 3-week-old WT hairy roots under non-symbiotic conditions. Fold changes compared with controls are depicted in log2 scale >= 0.585 (raw fold change of 1.5), p < 0.05. LSH1 DNA-binding sites associated with DEGs are depicted in dark green: high confidence, light green: moderate confidence, or gray: low/no confidence. See also Figure S7 and Data S1, S2B, and S2C.
